Sample ID: Escherichia_coli_p1
Reference to chewBBACA: Silva et al. (2018)
Reference information: These results made use of the PubMLST website developed by Keith Jolley (Jolley and Maiden 2010) and sited at the University of Oxford. The development of that website was funded by the Wellcome Trust. The typing information was obtained using: Seemann T, mlst.
This table includes both coding and non-coding sequences denoted by 1 and 0 in gene column respectively. The determination of which were which was performed with ariba prepareref command.
Reference to ARIBA: Hunt et al. (2017)
Reference to Resfinder: Zankari et al. (2012)
No found SNPs with mlst: https://github.com/tseemann/mlst
MultiQC report can be found here. Reference to MultiQC: Ewels et al. (2016).